STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3070Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: pmr:PMI3082 TetR-family transcriptional regulator. (216 aa)    
Predicted Functional Partners:
Xcel_3074
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A3688 ABC transporter component.
 
   
 0.770
Xcel_3075
PFAM: cobalt transport protein; KEGG: rru:Rru_A3687 cobalt transport protein.
 
   
 0.749
Xcel_3071
PFAM: BioY protein; KEGG: BioY protein precursor; K03523 putative biotin biosynthesis protein BioY.
 
   
 0.706
Xcel_3076
PFAM: zinc finger CHY domain protein; KEGG: apa:APP7_0634 hypothetical protein.
 
   
 0.677
Xcel_3072
KEGG: rru:Rru_A2517 AMP-dependent synthetase and ligase.
     
 0.593
Xcel_3073
KEGG: rec:RHECIAT_PC0000019 acetyl-CoA acetyltransferase protein; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.558
Xcel_1152
Putative PAS/PAC sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; KEGG: scl:sce1424 HTH-type transcriptional repressor PurR.
  
  
 0.551
Xcel_0279
Transcriptional regulator, TetR family; PFAM: Tetracyclin repressor domain protein; regulatory protein TetR; KEGG: scl:sce6697 putative transcriptional regulator.
  
     0.422
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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