STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3078PFAM: NUDIX hydrolase; KEGG: gme:Gmet_1790 NUDIX hydrolase. (134 aa)    
Predicted Functional Partners:
Xcel_3077
PFAM: type III restriction protein res subunit; helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; KEGG: prw:PsycPRwf_1920 type III restriction enzyme, res subunit.
     0.949
Xcel_0830
PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0002649 putative NTP pyrophosphohydrolase protein, MutT/NUDIX family; Belongs to the Nudix hydrolase family.
  
     0.743
Xcel_0394
PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop; KEGG: nar:Saro_0960 A/G-specific DNA-adenine glycosylase.
 
  
 0.738
Xcel_2335
PFAM: helicase domain protein; KEGG: bxe:Bxe_A0849 hypothetical protein.
 
      0.687
Xcel_3143
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: hypothetical protein.
 
 
    0.662
Xcel_3079
Hypothetical protein.
       0.572
Xcel_3080
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cti:RALTA_A1871 glycerophosphoryl diester phosphodiesterase.
  
    0.413
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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