STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3121Hypothetical protein. (328 aa)    
Predicted Functional Partners:
Xcel_1078
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ABC transporter substrate binding protein (proline/glycine/betaine).
  
     0.654
Xcel_1503
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
  
    0.623
Xcel_3020
KEGG: hypothetical protein.
  
     0.621
Xcel_2908
KEGG: hypothetical protein.
  
     0.596
Xcel_0659
KEGG: sil:SPO1241 hypothetical protein.
  
     0.561
Xcel_2364
Hypothetical protein.
  
     0.548
Xcel_1133
PFAM: protein of unknown function DUF541; KEGG: hypothetical protein.
  
     0.518
Xcel_0487
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: cti:RALTA_B0173 putative protease, transglutaminase motif.
  
     0.507
Xcel_1897
KEGG: ade:Adeh_3281 hypothetical protein.
  
     0.503
Xcel_0874
KEGG: ank:AnaeK_1628 hypothetical protein.
  
     0.496
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.