STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3129Hypothetical protein; KEGG: GG18790 gene product from transcript GG18790- RA. (179 aa)    
Predicted Functional Partners:
Xcel_3130
KEGG: swp:swp_0175 lipoprotein, putative.
 
     0.940
Xcel_3132
PFAM: ABC-2 type transporter; KEGG: bcz:BCZK3149 ABC transporter efflux permease; daunorubicin resistance transmembrane protein.
       0.718
Xcel_3131
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcr:BCAH187_A3468 ABC transporter, ATP- binding protein.
       0.675
Xcel_3128
Hypothetical protein.
       0.572
Xcel_1423
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: acp:A2cp1_3829 response regulator receiver protein.
  
     0.514
Xcel_0056
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: scl:sce6697 putative transcriptional regulator.
  
     0.463
Xcel_1967
PFAM: regulatory protein TetR; KEGG: mxa:MXAN_1727 transcriptional regulator, TetR family.
  
     0.441
Xcel_0279
Transcriptional regulator, TetR family; PFAM: Tetracyclin repressor domain protein; regulatory protein TetR; KEGG: scl:sce6697 putative transcriptional regulator.
  
     0.425
Xcel_1425
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bmj:BMULJ_00037 signal transduction histidine kinase.
  
     0.411
purQ
Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]
       0.404
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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