STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3152PFAM: extracellular solute-binding protein family 5; KEGG: sil:SPO0101 peptide/opine/nickel uptake ABC transporter periplasmic substrate-binding protein. (506 aa)    
Predicted Functional Partners:
Xcel_3151
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1312 binding-protein-dependent transport systems inner membrane component.
   0.993
Xcel_3168
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0467 ABC transporter, permease.
   0.946
Xcel_3150
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: binding-protein-dependent transport systems inner membrane component.
 
 0.945
Xcel_0953
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2014 ABC transporter permease protein.
   0.853
Xcel_1850
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcr:BCAH187_A1339 oligopeptide ABC transporter, permease protein.
 
   0.843
Xcel_3149
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: rsq:Rsph17025_3273 acetamidase/formamidase; Belongs to the ABC transporter superfamily.
  
 0.784
Xcel_3263
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr5417 ABC transporter permease protein.
   0.736
Xcel_3153
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mlo:mll1636 hypothetical protein.
 
     0.668
Xcel_0263
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce4301 peptide ABC transporter, permease protein.
   0.591
Xcel_0930
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce4301 peptide ABC transporter, permease protein.
   0.588
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.