STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3153Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mlo:mll1636 hypothetical protein. (290 aa)    
Predicted Functional Partners:
Xcel_3154
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mll2196 short chain oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.759
Xcel_3152
PFAM: extracellular solute-binding protein family 5; KEGG: sil:SPO0101 peptide/opine/nickel uptake ABC transporter periplasmic substrate-binding protein.
 
     0.668
Xcel_3149
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: rsq:Rsph17025_3273 acetamidase/formamidase; Belongs to the ABC transporter superfamily.
       0.516
Xcel_3150
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: binding-protein-dependent transport systems inner membrane component.
       0.516
Xcel_3151
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1312 binding-protein-dependent transport systems inner membrane component.
       0.516
Xcel_3155
TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mxa:MXAN_5178 exodeoxyribonuclease III.
  
    0.471
Xcel_3148
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mxa:MXAN_0923 oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.416
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.