STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3166PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bpe:BP2591 ABC transport protein, ATP-binding component; Belongs to the ABC transporter superfamily. (516 aa)    
Predicted Functional Partners:
Xcel_3167
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0469 ABC transporter, permease.
 
 0.991
Xcel_3150
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: binding-protein-dependent transport systems inner membrane component.
 
 0.975
Xcel_3262
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0135 ABC transporter permease protein.
 
 0.967
Xcel_0959
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1833 binding-protein-dependent transport systems inner membrane component.
 
 0.965
Xcel_1849
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcr:BCAH187_A1340 oligopeptide ABC transporter, permease protein.
 
 0.961
Xcel_0954
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV1646 ABC transporter, permease protein.
 
 0.942
Xcel_3168
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0467 ABC transporter, permease.
 
 0.940
Xcel_0264
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_2743 binding-protein-dependent transport systems inner membrane component.
 
 0.925
Xcel_0929
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_2743 binding-protein-dependent transport systems inner membrane component.
 
 0.909
Xcel_3169
PFAM: extracellular solute-binding protein family 5; KEGG: sme:SMa0466 ABC transporter, periplasmic solute-binding protein.
 
 
 0.861
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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