STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3168PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0467 ABC transporter, permease. (315 aa)    
Predicted Functional Partners:
Xcel_3167
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0469 ABC transporter, permease.
  
 0.972
Xcel_3169
PFAM: extracellular solute-binding protein family 5; KEGG: sme:SMa0466 ABC transporter, periplasmic solute-binding protein.
   0.965
Xcel_3152
PFAM: extracellular solute-binding protein family 5; KEGG: sil:SPO0101 peptide/opine/nickel uptake ABC transporter periplasmic substrate-binding protein.
   0.946
Xcel_3166
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bpe:BP2591 ABC transport protein, ATP-binding component; Belongs to the ABC transporter superfamily.
  
 0.912
Xcel_0955
KEGG: jan:Jann_4131 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.874
Xcel_1849
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcr:BCAH187_A1340 oligopeptide ABC transporter, permease protein.
  
 0.873
Xcel_3150
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: binding-protein-dependent transport systems inner membrane component.
  
 0.865
Xcel_0956
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: bja:blr1357 peptide ABC transporter ATP- binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.860
Xcel_1848
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: bce:BC1182 oligopeptide transport ATP-binding protein OppD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.856
Xcel_0954
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV1646 ABC transporter, permease protein.
  
 0.853
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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