STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3177PFAM: protein of unknown function DUF214; KEGG: afw:Anae109_1773 hypothetical protein. (378 aa)    
Predicted Functional Partners:
Xcel_3176
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_1688 lipoprotein-releasing system ATP- binding protein.
  
   0.869
Xcel_3175
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: gur:Gura_3473 peptidoglycan binding domain- containing protein.
       0.678
Xcel_3174
Hypothetical protein.
       0.664
Xcel_0028
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: gur:Gura_3474 ABC transporter related; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
  
 
 0.630
Xcel_3178
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: scl:sce5432 putative two-component system sensor kinase.
       0.505
Xcel_3179
Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: scl:sce5431 two-component system response regulator.
       0.505
Xcel_0346
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0970 ABC transporter, ATPase subunit.
  
   0.448
Xcel_0380
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1439 lipoprotein releasing system, ATP-binding protein.
  
   0.448
Xcel_0700
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lch:Lcho_3708 ABC transporter-related protein.
  
   0.448
Xcel_0815
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_3474 ABC transporter related.
  
   0.448
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.