STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3190PFAM: Pirin domain protein; KEGG: dac:Daci_0919 pirin domain-containing protein; Belongs to the pirin family. (351 aa)    
Predicted Functional Partners:
Xcel_3191
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: acp:A2cp1_0462 exonuclease SbcC.
  
    0.606
Xcel_3186
PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: tmz:Tmz1t_1111 NADH-ubiquinone oxidoreductase chain 4L.
     
 0.500
dcd
Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.
       0.433
Xcel_0433
Monooxygenase; KEGG: scl:sce0168 monooxygenase.
   
  
 0.422
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.