STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3200PFAM: Xylose isomerase domain protein TIM barrel; KEGG: gbm:Gbem_1512 xylose isomerase domain protein TIM barrel. (287 aa)    
Predicted Functional Partners:
Xcel_3201
Phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: cvi:CV_3052 phosphotransferase system.
       0.557
Xcel_0270
Fructokinase; PFAM: PfkB domain protein; KEGG: sme:SMc02164 fructokinase protein; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.490
Xcel_2588
TIGRFAM: cytidyltransferase-related domain protein; PFAM: oxidoreductase domain protein; cytidylyltransferase; KEGG: bac:BamMC406_1473 oxidoreductase domain- containing protein.
  
    0.487
Xcel_3199
Hypothetical protein.
       0.476
Xcel_1051
PFAM: type III restriction protein res subunit; SMART: DEAD-like helicase; KEGG: sde:Sde_1925 GGDEF family protein.
  
     0.467
whiB-3
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.456
Xcel_0352
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: xcv:XCV2116 GFO/IDH/MocA family oxidoreductase.
  
    0.454
Xcel_0892
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rde:RD1_0666 oxidoreductase, putative.
  
    0.454
Xcel_0896
PFAM: oxidoreductase domain protein; KEGG: atc:AGR_L_3386 hypothetical protein.
  
    0.454
Xcel_1373
PFAM: oxidoreductase domain protein; KEGG: probable myo-inositol dehydrogenase.
  
    0.454
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.