STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3225PFAM: membrane protein of unknown function; KEGG: gbm:Gbem_2195 membrane protein of unknown function. (137 aa)    
Predicted Functional Partners:
Xcel_0709
Putative signal transduction histidine kinase; PFAM: PspC domain protein; ATP-binding region ATPase domain protein; KEGG: sus:Acid_1604 integral membrane sensor signal transduction histidine kinase.
  
    0.705
Xcel_0060
PFAM: PspC domain protein; KEGG: hne:HNE_3296 phage shock protein C.
  
    0.701
Xcel_0708
Phage shock protein C, PspC; PFAM: PspC domain protein; KEGG: swi:Swit_2762 hypothetical protein.
  
    0.701
pat
Histidinol-phosphate aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
       0.672
Xcel_0213
KEGG: sus:Acid_1228 hypothetical protein.
  
  
 0.538
Xcel_3222
PFAM: Transketolase central region; Transketolase domain protein; KEGG: ank:AnaeK_2034 transketolase domain protein.
       0.441
Xcel_3223
KEGG: gbm:Gbem_0459 pyruvate dehydrogenase (acetyl- transferring) E1 component, alpha subunit; TIGRFAM: pyruvate dehydrogenase (acetyl- transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component.
       0.441
Xcel_3221
PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein; KEGG: bba:Bd0779 pyruvate dehydrogenase E2.
       0.420
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.