STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3247KEGG: rso:RSc3367 hypothetical protein; Belongs to the CoA-transferase III family. (463 aa)    
Predicted Functional Partners:
Xcel_1893
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sfu:Sfum_1404 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
  
 
 0.693
Xcel_3297
PFAM: Endoribonuclease L-PSP; KEGG: mlo:mll4506 hypothetical protein.
  
    0.552
Xcel_3246
Hypothetical protein.
       0.548
Xcel_2104
PFAM: HpcH/HpaI aldolase; KEGG: msl:Msil_3436 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.438
Xcel_1014
PFAM: Auxin Efflux Carrier; KEGG: acr:Acry_2889 auxin efflux carrier.
  
  
 0.406
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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