STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3295KEGG: mex:Mext_0984 beta-lactamase-like protein. (279 aa)    
Predicted Functional Partners:
Xcel_3296
PFAM: protein of unknown function DUF664.
       0.636
Xcel_1969
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: aha:AHA_1691 NADH dehydrogenase.
  
 0.555
Xcel_3345
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: sfu:Sfum_1398 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 0.555
Xcel_3294
Hypothetical protein; KEGG: acp:A2cp1_3600 serine/threonine protein kinase with WD40 repeats.
     
 0.549
Xcel_3297
PFAM: Endoribonuclease L-PSP; KEGG: mlo:mll4506 hypothetical protein.
  
    0.454
Xcel_2523
KEGG: afw:Anae109_4393 membrane protein.
  
    0.426
Xcel_2353
Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein; KEGG: smt:Smal_3622 luciferase-like monooxygenase.
  
     0.411
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.