STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3298Hypothetical protein. (141 aa)    
Predicted Functional Partners:
Xcel_0339
PFAM: protein of unknown function DUF664.
  
   
 0.653
Xcel_3299
TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumB; PFAM: (Uracil-5)-methyltransferase; KEGG: ypm:YP_1257 23S rRNA methyluridine methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
     0.617
Xcel_1650
PFAM: protein of unknown function DUF664.
  
   
 0.564
Xcel_1976
KEGG: rlt:Rleg2_1526 hypothetical protein.
  
     0.527
Xcel_3300
PFAM: transposase IS3/IS911 family protein; KEGG: reh:H16_B1731 transposase IS401.
 
     0.495
Xcel_3135
PFAM: Helix-turn-helix type 11 domain protein; protein of unknown function UPF0074; KEGG: scl:sce5223 DeoR family transcriptional regulator.
  
     0.429
Xcel_3296
PFAM: protein of unknown function DUF664.
 
   
 0.410
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.