STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3302Hypothetical protein; KEGG: bpm:BURPS1710b_A1613 rhs element Vgr protein. (550 aa)    
Predicted Functional Partners:
Xcel_0205
Hypothetical protein.
  
     0.591
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.542
Xcel_0139
Hypothetical protein; KEGG: similar to formin, inverted.
  
    0.537
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.502
Xcel_2553
KEGG: rru:Rru_A2121 hypothetical protein.
  
     0.501
Xcel_3303
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: rle:RL3095 ornithine cyclodeaminase.
 
     0.476
Xcel_3287
Putative transmembrane anti-sigma factor; KEGG: GK23348 gene product from transcript GK23348- RA.
 
   0.454
Xcel_0102
PFAM: Excalibur domain protein; KEGG: xau:Xaut_0293 translation initiation factor IF-2.
  
 
   0.448
Xcel_2643
KEGG: hypothetical protein.
  
 
   0.425
Xcel_2552
KEGG: rru:Rru_A2122 hypothetical protein.
  
     0.418
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.