STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3304PFAM: amidinotransferase; KEGG: aeh:Mlg_0130 amidinotransferase. (356 aa)    
Predicted Functional Partners:
Xcel_3305
PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: mlo:mlr7283 transcriptional regulator.
 
   
 0.824
Xcel_3303
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: rle:RL3095 ornithine cyclodeaminase.
       0.791
Xcel_1330
TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: pca:Pcar_2414 acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.787
Xcel_1007
PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: pla:Plav_3138 dihydrolipoamide dehydrogenase.
      
 0.662
Xcel_3293
PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; KEGG: pca:Pcar_3071 endonuclease IV.
     
 0.613
Xcel_3306
KEGG: nwi:Nwi_2132 hypothetical protein.
       0.529
Xcel_1298
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
   
    0.483
Xcel_2148
PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: bcn:Bcen_3914 AsnC family transcriptional regulator.
 
   
 0.469
Xcel_3307
Hypothetical protein.
       0.437
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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