STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3318PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bbr:BB1236 putative glyxalase. (184 aa)    
Predicted Functional Partners:
Xcel_3317
PFAM: aminoglycoside phosphotransferase; KEGG: dsh:Dshi_1990 aminoglycoside phosphotransferase.
       0.773
cobB
Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
  
    0.594
Xcel_2595
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bcy:Bcer98_3735 cell envelope-related transcriptional attenuator.
   
    0.587
Xcel_2289
Transcriptional regulator, AraC family; PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pol:Bpro_4080 transcriptional regulator, AraC family with amidase-like domain.
 
    0.474
Xcel_3319
PFAM: ABC-2 type transporter; KEGG: sus:Acid_6966 ABC-2 type transporter.
       0.465
Xcel_3320
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_6967 ABC transporter related.
       0.465
Xcel_1136
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mno:Mnod_3704 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
    0.458
Xcel_1435
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mmr:Mmar10_2206 AraC family transcriptional regulator.
 
    0.428
Xcel_3323
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bcz:BCZK2634 GntR family transcriptional regulator.
  
    0.425
Xcel_3321
KEGG: hypothetical protein.
       0.414
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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