STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3339PFAM: Epoxide hydrolase domain protein; KEGG: rle:RL2911 putative hydrolase. (376 aa)    
Predicted Functional Partners:
Xcel_3338
PFAM: Helix-turn-helix type 11 domain protein; regulatory protein DeoR; protein of unknown function UPF0074; KEGG: scl:sce5223 DeoR family transcriptional regulator.
 
     0.861
acpP
Phosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.563
Xcel_3337
PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: bcz:BCZK2964 microcin C7 self-immunity protein.
       0.539
Xcel_1425
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bmj:BMULJ_00037 signal transduction histidine kinase.
  
   0.466
Xcel_2443
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: met:M446_6655 short-chain dehydrogenase/reductase SDR.
 
   0.439
Xcel_2039
KEGG: mlo:mlr0992 hypothetical protein.
 
     0.400
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.