STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3343Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: tbd:Tbd_2736 ArsR family transcriptional regulator. (325 aa)    
Predicted Functional Partners:
Xcel_1642
PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_4522 hypothetical protein.
 
     0.716
Xcel_3344
Transcriptional regulator, MarR family; PFAM: Protein-tyrosine phosphatase, low molecular weight; regulatory protein ArsR; regulatory protein MarR; SMART: Protein-tyrosine phosphatase, low molecular weight; regulatory protein ArsR; KEGG: rsp:RSP_4210 ArsR family transcriptional regulator.
  
  
 0.630
Xcel_3345
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: sfu:Sfum_1398 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
  
 0.588
Xcel_3193
KEGG: bcb:BCB4264_A4969 hypothetical protein.
  
     0.580
Xcel_3342
KEGG: sal:Sala_0018 hypothetical protein.
       0.553
Xcel_1425
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bmj:BMULJ_00037 signal transduction histidine kinase.
  
     0.423
Xcel_1870
PFAM: aminoglycoside phosphotransferase; KEGG: scl:sce1315 phosphotransferase.
  
     0.413
Xcel_0176
Hypothetical protein.
 
   
 0.406
Xcel_3204
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ade:Adeh_3811 haloacid dehalogenase, type II.
  
    0.401
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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