STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3363PFAM: NUDIX hydrolase; KEGG: mxa:MXAN_4891 hydrolase, NUDIX family; Belongs to the Nudix hydrolase family. (219 aa)    
Predicted Functional Partners:
Xcel_3365
PFAM: virulence factor MVIN family protein; KEGG: rsp:RSP_1810 putative virulence factor, MviN.
 
     0.849
Xcel_3364
Hypothetical protein; KEGG: GH15499 gene product from transcript GH15499- RA.
       0.819
Xcel_3367
KEGG: similar to MGC139263 protein.
       0.819
Xcel_3366
Hypothetical protein.
       0.773
Xcel_3362
KEGG: hypothetical protein; TIGRFAM: tRNA adenylyltransferase; metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.649
Xcel_2490
KEGG: mms:mma_0681 acyl-CoA thioesterase I precursor.
 
     0.590
Xcel_0234
Hypothetical protein.
  
     0.579
Xcel_3368
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: zmo:ZMO1142 thioredoxin reductase.
       0.560
Xcel_3369
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: predicted protein; K03671 thioredoxin 1; Belongs to the thioredoxin family.
       0.560
Xcel_1476
KEGG: hypothetical protein.
  
     0.520
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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