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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALU38736.1XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)    
Predicted Functional Partners:
ALU41127.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.684
ALU38735.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.642
ALU39610.1
Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.538
ALU39054.1
HipA-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.515
ALU38737.1
IMP dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.509
ALU38884.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.473
ALU38734.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.421
Your Current Organism:
Kocuria flava
NCBI taxonomy Id: 446860
Other names: CCTCC AB 206106, JCM 15621, KCTC 19306, Kocuria flava Zhou et al. 2008, Kocuria sp. HO-9041, strain HO-9041
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