DDB0204509 protein (Dictyostelium discoideum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Dictyostelium discoideum

NCBI taxonomy Id: 44689
Other names: D. discoideum

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDB0189301	DDB0204509	Q54F03	Q54YJ2	Uncharacterized protein.	GpcrRhopsn4 domain-containing protein.	0.647
DDB0189301	gpr89	Q54F03	Q54QM5	Uncharacterized protein.	Golgi pH regulator homolog.	0.480
DDB0189301	grlQ	Q54F03	Q54K09	Uncharacterized protein.	Metabotropic glutamate receptor-like protein Q.	0.407
DDB0204153	DDB0204509	Q54U23	Q54YJ2	Uncharacterized protein.	GpcrRhopsn4 domain-containing protein.	0.653
DDB0204153	ap1g1	Q54U23	Q8I8U2	Uncharacterized protein.	AP-1 complex subunit gamma; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. Also involved in early steps of phagocytosis and macropinocytosis.	0.892
DDB0204153	ap4e1	Q54U23	Q54VE0	Uncharacterized protein.	AP-4 complex subunit epsilon; Probable component of an adaptor protein complex. Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways.	0.892
DDB0204509	DDB0189301	Q54YJ2	Q54F03	GpcrRhopsn4 domain-containing protein.	Uncharacterized protein.	0.647
DDB0204509	DDB0204153	Q54YJ2	Q54U23	GpcrRhopsn4 domain-containing protein.	Uncharacterized protein.	0.653
DDB0204509	DDB0204523	Q54YJ2	Q54YI0	GpcrRhopsn4 domain-containing protein.	Uncharacterized protein.	0.640
DDB0204509	DDB0206287	Q54YJ2	Q54XH8	GpcrRhopsn4 domain-containing protein.	Uncharacterized protein.	0.483
DDB0204509	DDB_G0285943	Q54YJ2	B0G155	GpcrRhopsn4 domain-containing protein.	Seven transmembrane domain protein.	0.640
DDB0204509	DDB_G0286487	Q54YJ2	Q54LQ7	GpcrRhopsn4 domain-containing protein.	Seven transmembrane domain protein.	0.647
DDB0204509	ap1g1	Q54YJ2	Q8I8U2	GpcrRhopsn4 domain-containing protein.	AP-1 complex subunit gamma; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. Also involved in early steps of phagocytosis and macropinocytosis.	0.462
DDB0204509	ap4e1	Q54YJ2	Q54VE0	GpcrRhopsn4 domain-containing protein.	AP-4 complex subunit epsilon; Probable component of an adaptor protein complex. Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways.	0.462
DDB0204509	gpr89	Q54YJ2	Q54QM5	GpcrRhopsn4 domain-containing protein.	Golgi pH regulator homolog.	0.636
DDB0204509	grlQ	Q54YJ2	Q54K09	GpcrRhopsn4 domain-containing protein.	Metabotropic glutamate receptor-like protein Q.	0.655
DDB0204523	DDB0204509	Q54YI0	Q54YJ2	Uncharacterized protein.	GpcrRhopsn4 domain-containing protein.	0.640
DDB0206287	DDB0204509	Q54XH8	Q54YJ2	Uncharacterized protein.	GpcrRhopsn4 domain-containing protein.	0.483
DDB_G0285943	DDB0204509	B0G155	Q54YJ2	Seven transmembrane domain protein.	GpcrRhopsn4 domain-containing protein.	0.640
DDB_G0286487	DDB0204509	Q54LQ7	Q54YJ2	Seven transmembrane domain protein.	GpcrRhopsn4 domain-containing protein.	0.647