DDB0219338 protein (Dictyostelium discoideum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DDB0219338

Uncharacterized protein. (539 aa)

Predicted Functional Partners:

DDB0188004

0.522

DDB0206111

0.521

DDB0206109

0.521

DDB0206525

0.521

DDB0205403

0.519

DDB0218143

0.517

DDB0188991

0.515

DDB0184375

0.514

DDB0186442

0.514

DDB0202981

0.514

Your Current Organism:

Dictyostelium discoideum

NCBI taxonomy Id: 44689
Other names: D. discoideum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDB0184375	DDB0186442	Q54D94	Q54NE0	Uncharacterized protein.	Uncharacterized protein.	0.516
DDB0184375	DDB0188004	Q54D94	Q54IQ9	Uncharacterized protein.	Uncharacterized protein.	0.514
DDB0184375	DDB0188991	Q54D94	Q54FS9	Uncharacterized protein.	Uncharacterized protein.	0.521
DDB0184375	DDB0202981	Q54D94	Q556G0	Uncharacterized protein.	Uncharacterized protein.	0.509
DDB0184375	DDB0205403	Q54D94	Q54Y87	Uncharacterized protein.	Uncharacterized protein.	0.515
DDB0184375	DDB0206109	Q54D94	Q54V22	Uncharacterized protein.	Uncharacterized protein.	0.512
DDB0184375	DDB0206111	Q54D94	Q54V20	Uncharacterized protein.	Uncharacterized protein.	0.514
DDB0184375	DDB0206525	Q54D94	Q54VH1	Uncharacterized protein.	Uncharacterized protein.	0.514
DDB0184375	DDB0218143	Q54D94	Q54XD7	Uncharacterized protein.	Uncharacterized protein.	0.509
DDB0184375	DDB0219338	Q54D94	Q54IX8	Uncharacterized protein.	Uncharacterized protein.	0.514
DDB0186442	DDB0184375	Q54NE0	Q54D94	Uncharacterized protein.	Uncharacterized protein.	0.516
DDB0186442	DDB0188004	Q54NE0	Q54IQ9	Uncharacterized protein.	Uncharacterized protein.	0.512
DDB0186442	DDB0188991	Q54NE0	Q54FS9	Uncharacterized protein.	Uncharacterized protein.	0.514
DDB0186442	DDB0202981	Q54NE0	Q556G0	Uncharacterized protein.	Uncharacterized protein.	0.509
DDB0186442	DDB0205403	Q54NE0	Q54Y87	Uncharacterized protein.	Uncharacterized protein.	0.514
DDB0186442	DDB0206109	Q54NE0	Q54V22	Uncharacterized protein.	Uncharacterized protein.	0.512
DDB0186442	DDB0206111	Q54NE0	Q54V20	Uncharacterized protein.	Uncharacterized protein.	0.516
DDB0186442	DDB0206525	Q54NE0	Q54VH1	Uncharacterized protein.	Uncharacterized protein.	0.514
DDB0186442	DDB0218143	Q54NE0	Q54XD7	Uncharacterized protein.	Uncharacterized protein.	0.509
DDB0186442	DDB0219338	Q54NE0	Q54IX8	Uncharacterized protein.	Uncharacterized protein.	0.514