Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DDB0217966 | ncbp1 | Q54ZS5 | Q55D17 | Uncharacterized protein. | Nuclear cap-binding protein subunit 1; Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp1 does not bind directly capped RNAs (m7GpppG- capped RNA) but is required to stabilize the movement of the N-terminal loop of ncbp2 and lock the CBC into a high affinity cap-binding state with the cap [...] | 0.987 |
| DDB0217966 | ncbp2 | Q54ZS5 | Q54KR9 | Uncharacterized protein. | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap struct [...] | 0.987 |
| DDB0217966 | snrpd2 | Q54ZS5 | Q54NC5 | Uncharacterized protein. | Probable small nuclear ribonucleoprotein Sm D2; Core component of the small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs (By similarity). | 0.405 |
| DDB0217966 | snrpf | Q54ZS5 | Q54XP2 | Uncharacterized protein. | Small nuclear ribonucleoprotein F; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. | 0.523 |
| DDB_G0291015 | Rbm8A | Q54F84 | Q54ME8 | Putative uncharacterized protein DDB_G0291015. | RRM domain-containing protein. | 0.466 |
| DDB_G0291015 | Sf3a3 | Q54F84 | Q55CK7 | Putative uncharacterized protein DDB_G0291015. | Zn finger-containing protein. | 0.864 |
| DDB_G0291015 | ncbp1 | Q54F84 | Q55D17 | Putative uncharacterized protein DDB_G0291015. | Nuclear cap-binding protein subunit 1; Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp1 does not bind directly capped RNAs (m7GpppG- capped RNA) but is required to stabilize the movement of the N-terminal loop of ncbp2 and lock the CBC into a high affinity cap-binding state with the cap [...] | 0.910 |
| DDB_G0291015 | ncbp2 | Q54F84 | Q54KR9 | Putative uncharacterized protein DDB_G0291015. | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap struct [...] | 0.930 |
| DDB_G0291015 | snrpD3 | Q54F84 | Q86L45 | Putative uncharacterized protein DDB_G0291015. | Small nuclear ribonucleoprotein Sm D3. | 0.989 |
| DDB_G0291015 | snrpE | Q54F84 | C7G054 | Putative uncharacterized protein DDB_G0291015. | Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.989 |
| DDB_G0291015 | snrpG | Q54F84 | Q54RX0 | Putative uncharacterized protein DDB_G0291015. | Probable small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. | 0.990 |
| DDB_G0291015 | snrpd2 | Q54F84 | Q54NC5 | Putative uncharacterized protein DDB_G0291015. | Probable small nuclear ribonucleoprotein Sm D2; Core component of the small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs (By similarity). | 0.955 |
| DDB_G0291015 | snrpf | Q54F84 | Q54XP2 | Putative uncharacterized protein DDB_G0291015. | Small nuclear ribonucleoprotein F; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. | 0.993 |
| Rbm8A | DDB_G0291015 | Q54ME8 | Q54F84 | RRM domain-containing protein. | Putative uncharacterized protein DDB_G0291015. | 0.466 |
| Rbm8A | ncbp1 | Q54ME8 | Q55D17 | RRM domain-containing protein. | Nuclear cap-binding protein subunit 1; Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp1 does not bind directly capped RNAs (m7GpppG- capped RNA) but is required to stabilize the movement of the N-terminal loop of ncbp2 and lock the CBC into a high affinity cap-binding state with the cap [...] | 0.678 |
| Rbm8A | ncbp2 | Q54ME8 | Q54KR9 | RRM domain-containing protein. | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap struct [...] | 0.971 |
| Rbm8A | snrpD3 | Q54ME8 | Q86L45 | RRM domain-containing protein. | Small nuclear ribonucleoprotein Sm D3. | 0.695 |
| Rbm8A | snrpE | Q54ME8 | C7G054 | RRM domain-containing protein. | Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.689 |
| Rbm8A | snrpG | Q54ME8 | Q54RX0 | RRM domain-containing protein. | Probable small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. | 0.668 |
| Rbm8A | snrpd2 | Q54ME8 | Q54NC5 | RRM domain-containing protein. | Probable small nuclear ribonucleoprotein Sm D2; Core component of the small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs (By similarity). | 0.762 |
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