STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDB0187208G-patch domain-containing protein. (1110 aa)    
Predicted Functional Partners:
dhx15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15; Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.
   
 
 0.896
Nol6
Uncharacterized protein.
   
 
 0.826
utp6
U3 small nucleolar RNA-associated protein 6 homolog; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the UTP6 family.
   
 
 0.821
ddx10
Probable ATP-dependent RNA helicase ddx10; Probable ATP-dependent RNA helicase which may be involved in ribosome biogenesis; Belongs to the DEAD box helicase family. DDX10/DBP4 subfamily.
    
 
 0.820
bysl
Bystin; Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits; Belongs to the bystin family.
   
 
 0.819
DDB0186073
MI domain-containing protein.
   
   0.818
DDB_G0278751
Ribosomal RNA processing protein 36 homolog; Involved in the early processing steps of the pre-rRNA in the maturation pathway leading to the 18S rRNA; Belongs to the RRP36 family.
   
   0.817
DDB0188327
Uncharacterized protein.
   
   0.814
Nop14
Uncharacterized protein.
    
   0.814
krr1
KRR1 small subunit processome component homolog; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (By similarity).
   
   0.814
Your Current Organism:
Dictyostelium discoideum
NCBI taxonomy Id: 44689
Other names: D. discoideum
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