Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DDB0186192 | DDB0187267 | Q54P54 | Q54KV9 | Uncharacterized protein. | Uncharacterized protein. | 0.542 |
DDB0186192 | Ercc8 | Q54P54 | Q551N8 | Uncharacterized protein. | Uncharacterized protein. | 0.540 |
DDB0186192 | ercc1 | Q54P54 | Q55GG6 | Uncharacterized protein. | DNA excision repair protein ERCC-1; Structure-specific DNA repair endonuclease responsible for the 5'-incision during DNA repair. | 0.540 |
DDB0186192 | ercc4 | Q54P54 | Q54PN5 | Uncharacterized protein. | DNA repair endonuclease XPF; Structure-specific DNA repair endonuclease responsible for the 5-prime incision during DNA repair. Involved in homologous recombination that assists in removing interstrand cross-link (By similarity); Belongs to the XPF family. | 0.587 |
DDB0186192 | lig4 | Q54P54 | Q54CR9 | Uncharacterized protein. | DNA ligase 4; Efficiently joins single-strand breaks in a double-stranded polydeoxynucleotide in an ATP-dependent reaction. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break repair; Belongs to the ATP-dependent DNA ligase family. | 0.554 |
DDB0186192 | mlh1 | Q54P54 | Q54KD8 | Uncharacterized protein. | DNA mismatch repair protein Mlh1; Heterodimerizes with pms1 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (msh2-msh6) or MutS beta (msh2-msh3) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of rfc and pcna is sufficient to activate endonuclease activity of pms1. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease exo1 to degrade the strand containing t [...] | 0.540 |
DDB0186192 | msh3 | Q54P54 | Q1ZXH0 | Uncharacterized protein. | DNA mismatch repair protein Msh3; Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with msh2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. MutS beta recognizes large insertion-deletion loops (IDL) up to 13 nucleotides long. After mismatch binding, forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, [...] | 0.556 |
DDB0186192 | rad4 | Q54P54 | Q1ZXA6 | Uncharacterized protein. | DNA repair protein Rad4 family protein. | 0.540 |
DDB0186192 | repB | Q54P54 | O00835 | Uncharacterized protein. | General transcription and DNA repair factor IIH helicase subunit XPB; ATP-dependent 3'-5' DNA helicase, component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. The ATPase activity of XPB/repB, but not its helicase activity, is required for [...] | 0.547 |
DDB0186192 | zswim7 | Q54P54 | Q55FI7 | Uncharacterized protein. | Zinc finger SWIM domain-containing protein 7 homolog; May be involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the SWS1 family. | 0.540 |
DDB0187267 | DDB0186192 | Q54KV9 | Q54P54 | Uncharacterized protein. | Uncharacterized protein. | 0.542 |
DDB0187267 | Ercc8 | Q54KV9 | Q551N8 | Uncharacterized protein. | Uncharacterized protein. | 0.544 |
DDB0187267 | ercc1 | Q54KV9 | Q55GG6 | Uncharacterized protein. | DNA excision repair protein ERCC-1; Structure-specific DNA repair endonuclease responsible for the 5'-incision during DNA repair. | 0.540 |
DDB0187267 | ercc4 | Q54KV9 | Q54PN5 | Uncharacterized protein. | DNA repair endonuclease XPF; Structure-specific DNA repair endonuclease responsible for the 5-prime incision during DNA repair. Involved in homologous recombination that assists in removing interstrand cross-link (By similarity); Belongs to the XPF family. | 0.544 |
DDB0187267 | lig4 | Q54KV9 | Q54CR9 | Uncharacterized protein. | DNA ligase 4; Efficiently joins single-strand breaks in a double-stranded polydeoxynucleotide in an ATP-dependent reaction. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break repair; Belongs to the ATP-dependent DNA ligase family. | 0.540 |
DDB0187267 | mlh1 | Q54KV9 | Q54KD8 | Uncharacterized protein. | DNA mismatch repair protein Mlh1; Heterodimerizes with pms1 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (msh2-msh6) or MutS beta (msh2-msh3) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of rfc and pcna is sufficient to activate endonuclease activity of pms1. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease exo1 to degrade the strand containing t [...] | 0.541 |
DDB0187267 | msh3 | Q54KV9 | Q1ZXH0 | Uncharacterized protein. | DNA mismatch repair protein Msh3; Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with msh2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. MutS beta recognizes large insertion-deletion loops (IDL) up to 13 nucleotides long. After mismatch binding, forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, [...] | 0.546 |
DDB0187267 | rad4 | Q54KV9 | Q1ZXA6 | Uncharacterized protein. | DNA repair protein Rad4 family protein. | 0.540 |
DDB0187267 | repB | Q54KV9 | O00835 | Uncharacterized protein. | General transcription and DNA repair factor IIH helicase subunit XPB; ATP-dependent 3'-5' DNA helicase, component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. The ATPase activity of XPB/repB, but not its helicase activity, is required for [...] | 0.540 |
DDB0187267 | zswim7 | Q54KV9 | Q55FI7 | Uncharacterized protein. | Zinc finger SWIM domain-containing protein 7 homolog; May be involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the SWS1 family. | 0.540 |
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