Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DDB0192167 | DDB0204927 | Q54B72 | Q54S30 | Uncharacterized protein. | Uncharacterized protein. | 0.479 |
DDB0192167 | Xrcc1 | Q54B72 | Q86H44 | Uncharacterized protein. | Uncharacterized protein. | 0.998 |
DDB0192167 | ku80 | Q54B72 | Q54LY5 | Uncharacterized protein. | X-ray repair cross-complementing protein 5; Involved in non-homologous end joining (NHEJ) DNA double strand break repair. | 0.768 |
DDB0192167 | lig1 | Q54B72 | Q869E1 | Uncharacterized protein. | DNA ligase 1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair; Belongs to the ATP-dependent DNA ligase family. | 0.714 |
DDB0192167 | polB | Q54B72 | Q1ZXF2 | Uncharacterized protein. | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | 0.794 |
DDB0192167 | repG | Q54B72 | Q54NU0 | Uncharacterized protein. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.716 |
DDB0204927 | DDB0192167 | Q54S30 | Q54B72 | Uncharacterized protein. | Uncharacterized protein. | 0.479 |
DDB0204927 | Xrcc1 | Q54S30 | Q86H44 | Uncharacterized protein. | Uncharacterized protein. | 0.997 |
DDB0204927 | ku80 | Q54S30 | Q54LY5 | Uncharacterized protein. | X-ray repair cross-complementing protein 5; Involved in non-homologous end joining (NHEJ) DNA double strand break repair. | 0.743 |
DDB0204927 | lig1 | Q54S30 | Q869E1 | Uncharacterized protein. | DNA ligase 1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair; Belongs to the ATP-dependent DNA ligase family. | 0.714 |
DDB0204927 | polB | Q54S30 | Q1ZXF2 | Uncharacterized protein. | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | 0.794 |
DDB0204927 | repG | Q54S30 | Q54NU0 | Uncharacterized protein. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.716 |
Xrcc1 | DDB0192167 | Q86H44 | Q54B72 | Uncharacterized protein. | Uncharacterized protein. | 0.998 |
Xrcc1 | DDB0204927 | Q86H44 | Q54S30 | Uncharacterized protein. | Uncharacterized protein. | 0.997 |
Xrcc1 | ku80 | Q86H44 | Q54LY5 | Uncharacterized protein. | X-ray repair cross-complementing protein 5; Involved in non-homologous end joining (NHEJ) DNA double strand break repair. | 0.935 |
Xrcc1 | lig1 | Q86H44 | Q869E1 | Uncharacterized protein. | DNA ligase 1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair; Belongs to the ATP-dependent DNA ligase family. | 0.744 |
Xrcc1 | polB | Q86H44 | Q1ZXF2 | Uncharacterized protein. | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | 0.965 |
Xrcc1 | pold1 | Q86H44 | Q54N97 | Uncharacterized protein. | DNA polymerase delta catalytic subunit; Possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction. | 0.483 |
Xrcc1 | repG | Q86H44 | Q54NU0 | Uncharacterized protein. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.628 |
ku80 | DDB0192167 | Q54LY5 | Q54B72 | X-ray repair cross-complementing protein 5; Involved in non-homologous end joining (NHEJ) DNA double strand break repair. | Uncharacterized protein. | 0.768 |
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