STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcF2ABC transporter F family member 2; Belongs to the ABC transporter superfamily. ABCF family. EF3 subfamily. (593 aa)    
Predicted Functional Partners:
DDB0203044
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.
  
 
 0.776
mrpl27
Probable 39S ribosomal protein L27, mitochondrial.
  
 
 0.765
rps5
40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.764
mrpl21
Probable 39S ribosomal protein L21, mitochondrial.
  
   0.763
rpl23a
60S ribosomal protein L23a; This protein binds to a specific region on the 26S rRNA.
   
 
 0.759
rps3
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
   0.753
rps18
40S ribosomal protein S18; Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA; Belongs to the universal ribosomal protein uS13 family.
  
 
 0.751
rpl35
60S ribosomal protein L35; Belongs to the universal ribosomal protein uL29 family.
   
 
 0.747
rpl11
60S ribosomal protein L11; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through [...]
   
 
 0.744
rps15a
40S ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.
  
 
 0.744
Your Current Organism:
Dictyostelium discoideum
NCBI taxonomy Id: 44689
Other names: D. discoideum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.