STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lboz_0465Anti-anti-sigma factor. (94 aa)    
Predicted Functional Partners:
ttg2D
Toluene tolerance protein Ttg2D.
  
 
 0.973
yrbD
Toluene transporter subunit: membrane component of ABC superfamily protein.
  
 0.955
yrbF
Toluene transporter subunit: ATP-binding component of ABC superfamily protein.
  
 0.937
yrbE
Toluene transporter subunit: membrane component of ABC superfamily protein.
  
 0.928
Lboz_1772
ABC transporter ATP binding protein.
  
 0.709
Lboz_1771
Mammalian cell entry related domain protein.
  
 0.680
Lboz_1773
ABC transporter permease.
  
 0.667
kdsD
Arabinose 5-phosphate isomerase.
     
 0.641
kdsC
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
       0.588
lptC
Lipopolysaccharide export system protein LptC.
       0.588
Your Current Organism:
Fluoribacter bozemanae
NCBI taxonomy Id: 447
Other names: ATCC 33217, CIP 103872, DSM 16523, F. bozemanae, Fluoribacter bozemaniae, Legionella bozemaniae, Legionella bozemanii, NCTC 11368, strain ALLO1, strain WIGA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.