STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lboz_1007IcmJ protein. (208 aa)    
Predicted Functional Partners:
Lboz_1016
Protein IcmO (DotL).
   
 
 0.969
Lboz_1017
IcmP protein.
   
 
 0.941
Lboz_0067
Hypothetical protein.
    
   0.884
Lboz_0878
Substrate of the Dot/Icm secretion system.
    
   0.884
Lboz_1006
Protein IcmB (DotO).
       0.817
dotF
Component of the Dot/Icm secretion system.
     
 0.816
icmD_1
IcmD (DotP).
    
 0.811
icmM
IcmM (DotJ).
     
 0.744
Lboz_1012
IcmK protein.
     
 0.729
Lboz_1009
IcmC (DotE).
     
 0.699
Your Current Organism:
Fluoribacter bozemanae
NCBI taxonomy Id: 447
Other names: ATCC 33217, CIP 103872, DSM 16523, F. bozemanae, Fluoribacter bozemaniae, Legionella bozemaniae, Legionella bozemanii, NCTC 11368, strain ALLO1, strain WIGA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.