STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lboz_1925Zinc metalloproteinase precursor; Extracellular zinc metalloprotease. (549 aa)    
Predicted Functional Partners:
Lboz_2612
Chitinase.
  
  
 0.615
Lboz_2423
Sphingomyelin phosphodiesterase.
  
    0.545
Lboz_1926
Hypothetical protein.
       0.543
Lboz_1408
Chitin-binding protein.
  
  
 0.534
Lboz_0568
Chitin-binding protein.
  
  
 0.491
Lboz_3143
Glycosyl hydrolase family 18; Belongs to the glycosyl hydrolase 18 family.
 
   
 0.484
Lboz_1927
Serine carboxypeptidase.
       0.478
Your Current Organism:
Fluoribacter bozemanae
NCBI taxonomy Id: 447
Other names: ATCC 33217, CIP 103872, DSM 16523, F. bozemanae, Fluoribacter bozemaniae, Legionella bozemaniae, Legionella bozemanii, NCTC 11368, strain ALLO1, strain WIGA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.