STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lboz_2479Phytanoyl-CoA dioxygenase. (282 aa)    
Predicted Functional Partners:
Lboz_3162
HD domain protein.
 
  
  0.807
Lboz_3161
phytanoyl-CoA dioxygenase.
  
     0.658
Lboz_2481
Inosine-uridine preferring nucleoside hydrolase; Belongs to the IUNH family.
  
    0.531
Lboz_2480
Major facilitator family transporter.
       0.529
Lboz_0102
Polyketide synthase.
  
 
 0.528
Lboz_2386
Methoxymalonyl CoA synthase.
  
  
 0.493
Lboz_3221
Polyketide synthase.
  
 
 0.492
Lboz_0866
Transmembrane protein.
  
     0.485
pksJ_2
Polyketide synthase, type I.
  
 
 0.482
dam
DNA adenine methylase.
       0.408
Your Current Organism:
Fluoribacter bozemanae
NCBI taxonomy Id: 447
Other names: ATCC 33217, CIP 103872, DSM 16523, F. bozemanae, Fluoribacter bozemaniae, Legionella bozemaniae, Legionella bozemanii, NCTC 11368, strain ALLO1, strain WIGA
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