STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCBG_02439Rick_17kDa_Anti domain-containing protein. (203 aa)    
Predicted Functional Partners:
HCBG_00184
SRm160/300 splicing coactivator.
   
 0.915
HCBG_04094
U4/U6.U5 tri-snRNP-associated protein snu66.
   
 
 0.891
HCBG_05876
U1 snRNP-associated protein Usp106.
   
 0.881
HCBG_06277
WD domain-containing protein.
   
 0.881
HCBG_01590
U1 small nuclear ribonucleoprotein.
   
 
 0.871
HCBG_03244
Pre-mRNA-processing protein prp40.
   
 
 0.865
HCBG_04212
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 
 0.853
HCBG_03277
Pre-mRNA-processing ATP-dependent RNA helicase PRP5.
   
 0.848
HCBG_01341
RNA splicing factor Pad-1.
   
 0.834
HCBG_05873
FF domain-containing protein.
   
 
  0.834
Your Current Organism:
Histoplasma capsulatum G186AR
NCBI taxonomy Id: 447093
Other names: Ajellomyces capsulatus G186AR, H. capsulatum G186AR
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.