Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HCBG_00357 | HCBG_03858 | C0NB61 | C0NL28 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase subunit. | 0.999 |
HCBG_00357 | HCBG_04885 | C0NB61 | C0NP05 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase I. | 0.999 |
HCBG_00357 | HCBG_06100 | C0NB61 | C0NSH0 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase II polypeptide. | 0.999 |
HCBG_00357 | HCBG_06655 | C0NB61 | C0NUP1 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Polymerase II polypeptide D. | 0.999 |
HCBG_00357 | HCBG_06798 | C0NB61 | C0NV34 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | PHD finger containing protein Phf1. | 0.675 |
HCBG_00357 | HCBG_07385 | C0NB61 | C0NW55 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Integral membrane protein. | 0.532 |
HCBG_00357 | HCBG_07565 | C0NB61 | C0NWN5 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Polymerase II polypeptide J. | 0.999 |
HCBG_03858 | HCBG_00357 | C0NL28 | C0NB61 | RNA polymerase subunit. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
HCBG_03858 | HCBG_04885 | C0NL28 | C0NP05 | RNA polymerase subunit. | DNA-directed RNA polymerase I. | 0.999 |
HCBG_03858 | HCBG_06100 | C0NL28 | C0NSH0 | RNA polymerase subunit. | DNA-directed RNA polymerase II polypeptide. | 0.999 |
HCBG_03858 | HCBG_06655 | C0NL28 | C0NUP1 | RNA polymerase subunit. | Polymerase II polypeptide D. | 0.999 |
HCBG_03858 | HCBG_06798 | C0NL28 | C0NV34 | RNA polymerase subunit. | PHD finger containing protein Phf1. | 0.674 |
HCBG_03858 | HCBG_07385 | C0NL28 | C0NW55 | RNA polymerase subunit. | Integral membrane protein. | 0.529 |
HCBG_03858 | HCBG_07565 | C0NL28 | C0NWN5 | RNA polymerase subunit. | Polymerase II polypeptide J. | 0.999 |
HCBG_04325 | HCBG_04374 | C0NLE5 | C0NLJ4 | Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates. | Nitrate reductase. | 0.941 |
HCBG_04325 | HCBG_04732 | C0NLE5 | C0NNK2 | Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates. | Nitrate reductase. | 0.941 |
HCBG_04325 | HCBG_07385 | C0NLE5 | C0NW55 | Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates. | Integral membrane protein. | 0.596 |
HCBG_04374 | HCBG_04325 | C0NLJ4 | C0NLE5 | Nitrate reductase. | Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates. | 0.941 |
HCBG_04374 | HCBG_04732 | C0NLJ4 | C0NNK2 | Nitrate reductase. | Nitrate reductase. | 0.986 |
HCBG_04374 | HCBG_07385 | C0NLJ4 | C0NW55 | Nitrate reductase. | Integral membrane protein. | 0.507 |
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