Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMD88723.1Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)    
Predicted Functional Partners:
AMD88885.1
Iron hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.871
AMD88886.1
Iron hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.834
AMD89754.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.789
AMD89447.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.765
AMD91363.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.760
AMD89755.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.757
htpG
Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
  
 0.756
AMD91179.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.756
AMD89876.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.751
AMD91367.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.748
Your Current Organism:
Desulfovibrio fairfieldensis
NCBI taxonomy Id: 44742
Other names: ATCC 70045, D. fairfieldensis, strain FH26001/95
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