Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMD88726.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)    
Predicted Functional Partners:
AXF13_12305
Amino acid permease; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
0.998
AMD90844.1
12,18-didecarboxysiroheme deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.984
AMD90842.1
Heme b synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.828
hemL
Glutamate-1-semialdehyde aminotransferase; Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.746
AMD88727.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.539
AMD90940.1
HemD protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.532
AMD91455.1
Cobalamin biosynthesis protein CbiG; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.467
AMD91130.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.453
AMD91424.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.439
AMD88724.1
Catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.406
Your Current Organism:
Desulfovibrio fairfieldensis
NCBI taxonomy Id: 44742
Other names: ATCC 70045, D. fairfieldensis, strain FH26001/95
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