Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMD88886.1Iron hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)    
Predicted Functional Partners:
AMD88885.1
Iron hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.994
AMD88887.1
[FeFe] hydrogenase H-cluster radical SAM maturase HydE; Catalyzes the formation of biotin from dethiobiotin and sulfur; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.932
thiH
[FeFe] hydrogenase H-cluster radical SAM maturase HydG; In Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.927
AMD88884.1
[FeFe] hydrogenase H-cluster maturation GTPase HydF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.885
AMD91440.1
Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
   
 
 0.838
AMD88723.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.834
AMD89384.1
4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.792
AMD88906.1
[FeFe] hydrogenase H-cluster radical SAM maturase HydG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.773
AMD89613.1
Pyruvate formate lyase-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.657
AMD89233.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.625
Your Current Organism:
Desulfovibrio fairfieldensis
NCBI taxonomy Id: 44742
Other names: ATCC 70045, D. fairfieldensis, strain FH26001/95
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