Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMD88942.1Energy transducer TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (316 aa)    
Predicted Functional Partners:
AMD89562.1
Receptor -mostly Fe transport; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.791
AMD89557.1
Protein TolR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.785
AMD89120.1
Protein TolR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.783
AMD88943.1
Cation ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.780
AMD89558.1
Protein TolQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.746
AMD89121.1
Protein TolQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.735
AMD88947.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.719
AMD89116.1
Translocation protein TolB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.589
AMD90043.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.552
AMD91384.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.552
Your Current Organism:
Desulfovibrio fairfieldensis
NCBI taxonomy Id: 44742
Other names: ATCC 70045, D. fairfieldensis, strain FH26001/95
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