STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMD89005.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (602 aa)    
Predicted Functional Partners:
AMD89000.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.808
AMD88996.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.795
AMD89006.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.790
AXF13_02095
Hypothetical protein; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.778
AMD89003.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.776
AMD88800.1
Chemotaxis protein CheZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.687
AMD89858.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.491
AMD90779.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.450
AMD91247.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.437
AMD89809.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.423
Your Current Organism:
Desulfovibrio fairfieldensis
NCBI taxonomy Id: 44742
Other names: ATCC 70045, D. fairfieldensis, strain FH26001/95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.