Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMD89101.1Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (808 aa)    
Predicted Functional Partners:
AMD89100.1
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.999
AMD89102.1
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
AMD89888.1
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.997
AMD89890.1
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.994
AMD88676.1
4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.976
AMD88806.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.974
AMD89432.1
Trehalose-binding protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
  
 
 0.926
AMD90720.1
Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.926
AMD89889.1
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 
0.903
AMD89103.1
Formate dehydrogenase; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
 
 
 0.882
Your Current Organism:
Desulfovibrio fairfieldensis
NCBI taxonomy Id: 44742
Other names: ATCC 70045, D. fairfieldensis, strain FH26001/95
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