Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ppkRNA degradosome polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (721 aa)    
Predicted Functional Partners:
AMD89232.1
Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.982
AMD89231.1
Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.941
AMD89677.1
Inorganic pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
AMD90543.1
Polyphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.817
AMD89229.1
Glycoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.484
AMD89984.1
Iron-sulfur cluster assembly scaffold protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
     
 0.423
AMD89034.1
PhoU family transcriptional regulator; Plays a role in the regulation of phosphate uptake.
     
 0.419
AMD90602.1
Inorganic phosphate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.419
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
     
 0.406
Your Current Organism:
Desulfovibrio fairfieldensis
NCBI taxonomy Id: 44742
Other names: ATCC 70045, D. fairfieldensis, strain FH26001/95
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