Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMD89356.14Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)    
Predicted Functional Partners:
AMD90691.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.630
AMD88886.1
Iron hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.598
AMD89357.1
Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.535
AMD91123.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.527
AMD91074.1
1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.488
AMD91562.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.479
AMD90193.1
NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.450
AMD90812.1
NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.424
AMD89355.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.418
AMD90835.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.409
Your Current Organism:
Desulfovibrio fairfieldensis
NCBI taxonomy Id: 44742
Other names: ATCC 70045, D. fairfieldensis, strain FH26001/95
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