STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMD89411.1HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)    
Predicted Functional Partners:
AMD89410.1
Glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.591
AMD89409.1
Anaerobic glycerol-3-phosphate dehydrogenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.564
AMD89767.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.491
AMD89408.1
Glycerol-3-phosphate dehydrogenase, anaerobic, C subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.465
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
 
    0.457
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
   0.449
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
 
   
 0.446
AMD91439.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.423
nadE
Glutamine-dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
  
 0.415
Your Current Organism:
Desulfovibrio fairfieldensis
NCBI taxonomy Id: 44742
Other names: ATCC 70045, D. fairfieldensis, strain FH26001/95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.