Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMD89850.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (166 aa)    
Predicted Functional Partners:
AMD89847.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.918
AMD89848.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.904
AMD89849.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.866
AMD90269.1
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.815
AMD90272.1
Sulfate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.811
AMD89831.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.807
AMD89829.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.806
AMD90268.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.797
AMD90289.1
Head protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.797
AMD89822.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.790
Your Current Organism:
Desulfovibrio fairfieldensis
NCBI taxonomy Id: 44742
Other names: ATCC 70045, D. fairfieldensis, strain FH26001/95
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