Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMD89865.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (562 aa)    
Predicted Functional Partners:
AMD89864.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.968
AMD89862.1
PpkA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.950
AMD89860.1
Type III effector HopL1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.925
AMD89861.1
Aromatic ring-opening dioxygenase LigA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.921
AMD89858.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.919
AMD89863.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.918
AMD89859.1
ssrAB activated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.913
AMD89574.1
Dimodular nonribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.812
AMD89857.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.764
AMD89866.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.737
Your Current Organism:
Desulfovibrio fairfieldensis
NCBI taxonomy Id: 44742
Other names: ATCC 70045, D. fairfieldensis, strain FH26001/95
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