Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMD90354.1Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)    
Predicted Functional Partners:
AMD89921.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
AMD89099.1
PAS domain S-box protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.731
AMD90951.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.723
AMD91640.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.718
AMD90531.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.713
AMD91075.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   0.713
AMD90700.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.710
AMD88707.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.709
AMD91217.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.706
AMD88741.1
Developmental regulator MorA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.705
Your Current Organism:
Desulfovibrio fairfieldensis
NCBI taxonomy Id: 44742
Other names: ATCC 70045, D. fairfieldensis, strain FH26001/95
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