AMD90472.1 protein (Desulfovibrio fairfieldensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMD90472.1

Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (706 aa)

Predicted Functional Partners:

AMD89785.1

0.981

AMD89681.1

0.962

AMD91248.1

0.962

AMD89783.1

0.941

cheB

0.938

AMD91529.1

0.936

AMD88635.1

0.913

AMD90948.1

0.912

AMD90857.1

0.902

AMD90806.1

0.764

Your Current Organism:

Desulfovibrio fairfieldensis

NCBI taxonomy Id: 44742
Other names: ATCC 70045, D. fairfieldensis, strain FH26001/95

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMD88635.1	AMD89681.1	AXF13_00015	AXF13_05895	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
AMD88635.1	AMD89783.1	AXF13_00015	AXF13_06485	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
AMD88635.1	AMD89785.1	AXF13_00015	AXF13_06495	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AMD88635.1	AMD90472.1	AXF13_00015	AXF13_10285	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AMD88635.1	AMD90806.1	AXF13_00015	AXF13_12110	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
AMD88635.1	AMD90857.1	AXF13_00015	AXF13_12395	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AMD88635.1	AMD90948.1	AXF13_00015	AXF13_12880	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
AMD88635.1	AMD91248.1	AXF13_00015	AXF13_14555	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
AMD88635.1	AMD91529.1	AXF13_00015	AXF13_06475	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.	0.836
AMD88635.1	cheB	AXF13_00015	AXF13_06465	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.	0.937
AMD89681.1	AMD88635.1	AXF13_05895	AXF13_00015	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
AMD89681.1	AMD89783.1	AXF13_05895	AXF13_06485	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
AMD89681.1	AMD89785.1	AXF13_05895	AXF13_06495	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AMD89681.1	AMD90472.1	AXF13_05895	AXF13_10285	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
AMD89681.1	AMD90806.1	AXF13_05895	AXF13_12110	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AMD89681.1	AMD90857.1	AXF13_05895	AXF13_12395	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
AMD89681.1	AMD90948.1	AXF13_05895	AXF13_12880	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
AMD89681.1	AMD91248.1	AXF13_05895	AXF13_14555	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AMD89681.1	AMD91529.1	AXF13_05895	AXF13_06475	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.	0.938
AMD89681.1	cheB	AXF13_05895	AXF13_06465	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.	0.987