Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMD90840.1Protein-tyrosine-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)    
Predicted Functional Partners:
AMD90839.1
Aldehyde dehydrogenase; NAD-linked; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family.
       0.773
AMD91446.1
Sulfate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.649
AMD88638.1
Sulfate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.649
AMD90569.1
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 
 
 0.597
AMD90953.1
Peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 
 
 0.595
AMD89673.1
Heptosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.538
AMD89692.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.538
AMD90830.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.538
AMD90255.1
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.496
AMD90717.1
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.496
Your Current Organism:
Desulfovibrio fairfieldensis
NCBI taxonomy Id: 44742
Other names: ATCC 70045, D. fairfieldensis, strain FH26001/95
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