Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMD91245.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. (475 aa)    
Predicted Functional Partners:
AMD91566.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.888
AMD89588.1
Spidroin-2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.721
AMD89574.1
Dimodular nonribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.654
AMD91508.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.470
AMD90505.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.469
AMD89128.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.460
cobQ
Cobalamin biosynthesis protein CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
       0.451
AMD89573.1
Condensation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.426
AMD91424.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.419
AMD90504.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.403
Your Current Organism:
Desulfovibrio fairfieldensis
NCBI taxonomy Id: 44742
Other names: ATCC 70045, D. fairfieldensis, strain FH26001/95
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